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Indels (insertion-deletion)

Please enter a gene symbol or a chromosome location for one of the genome versions, such as Btau 5.0.1 (GCF_000003205.7), UMD3.1.1 (GCF_000003055.6) and ARS-UCD1.2 (GCF_002263795.1), to obtain a indel information and allele frequency distribution pattern in 54 world-wide cattle breeds or six "core" cattle groups.

Basic search

Gene symbol:   e.g., , ,

Or Chromosome location:   For Btau_5.0.1, e.g., ,

Or Chromosome location:   For UMD_3.1.1, e.g., ,

Or Chromosome location:   For ARS-UCD1.2, e.g., ,

Advanced search

Minor allele frequency   (range: 0-1)

Consequence type:

Transcript variant
  • Coding variant
    • Exon_loss_variant
    • Start_lost
    • Stop_lost
    • Stop_gained
    • Gene_fusion
    • Frameshift_variant
    • Conservative_inframe_deletion
    • Conservative_inframe_insertion
    • Disruptive_inframe_deletion
    • Disruptive_inframe_insertion
  • Non-coding variant
    • 5_prime_UTR_variant
    • 3_prime_UTR_variant
    • Intron_variant
    • Non_coding_transcript_exon_variant
  • Splice variant
    • Splice_acceptor_variant
    • Splice_donor_variant
    • Splice_region_variant
Intragenic variant
  • Intragenic_variant
Intergenic variant
  • Upstream_gene_variant
  • Downstream_gene_variant
  • Intergenic_variant