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SNPs (single nucleotide polymorphisms)

Please enter a dbSNP rsid, or a gene symbol, or a chrom location for one of the genome versions, such as Btau 5.0.1 (GCF_000003205.7), UMD3.1.1 (GCF_000003055.6) and ARS-UCD1.2 (GCF_002263795.1), to obtain SNPs information and allele frequency distribution pattern in 54 world-wide cattle breeds or six "core" cattle groups.

Basic Search

dbSNP rsid:   e.g. ,

Or Gene symbol:   e.g. , ,

Or Chrom location:   For Btau_5.0.1, e.g. ,

Or Chrom location:   For UMD_3.1.1, e.g. ,

Or Chrom location:   For ARS-UCD1.2, e.g. ,

Advanced Search

Minor Allele Frequency    (range: 0-1)

Consequence Type:

Transcript Variant
  • Coding Variant
    • missense_variant
    • initiator_codon_variant
    • start_lost
    • stop_lost
    • stop_gained
    • stop_retained_variant
    • synonymous_variant
  • Non-coding Variant
    • 5_prime_UTR_variant
    • start_gained
    • 3_prime_UTR_variant
    • intron_variant
    • non_coding_transcript_exon_variant
  • Splice Variant
    • splice_acceptor_variant
    • splice_donor_variant
    • splice_region_variant
Intragenic Variant
  • intragenic_variant
Intergenic Variant
  • upstream_gene_variant
  • downstream_gene_variant
  • intergenic_variant