Ruminantia

About Genome Database

Genome Browser releases "Comparative Genomics" tracks that including 67-species synteny (47 de novo, 8 published ruminant genomes, and 12 outgroup species genomes) and five scales of measurements of evolutionary conservation, which will help to analyze protein-coding genes, identify regulatory elements, reveal similarities and differences among species, and trace the course of evolution. Genome Browser also release "Gene", "QTL", and "Expression and Regulation" tracks for three major livestock (goat, sheep, and cattle).

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Download Goat Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • Goat NCBI Genes
    • Goat Ensembl Genes
    • Sheep NCBI Genes
    • Cattle NCBI Genes
    • Cattle Ensembl Genes
    • hg38 UCSC Genes
    • miRBase
  • Expression and Regulation
    • cattle liver H3K4Me3
    • cattle liver H3K4Me1
    • cattle liver H3K27Ac
    • cattle testis H3K4Me3
    • cattle testis H3K27Me3
    • cattle bESC H3K4Me3
    • cattle bESC H3K27Me3
    • cattle longissimus dorsi H3K4Me3
    • sheep adipose H3K4Me3
    • sheep adipose H3K27Ac
    • sheep liver ATACseq
    • sheep rumen ATACseq
    • goat rumen H3K27Ac
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • regulatory regions
    • expreBar
  • Comparative Genomics
    • Cons 100 Verts
    • Cons 20 Mammals
    • Ruminantia_phyloP
    • Pecora phyloP
    • Bovidae_phyloP
    • Ruminantia_phastCons
    • Pecora_phastCons
    • Bovidae_phastCons
    • 67-way Multiz Align
Download Sheep Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • gene
    • miRBase & miRTarBase
    • QTL
  • Expression and Regulation
    • sheep adipose H3K4Me3
    • sheep adipose H3K27Ac
    • sheep liver ATACseq
    • sheep rumen ATACseq
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • expreBar
  • Comparative Genomics
    • Cons 100 Verts
    • Cons 20 Mammals
    • AlignVSOori1
Download Cattle Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • gene
    • miRBase & miRTarBase
    • QTL
  • Expression and Regulation
    • cattle liver H3K4Me3
    • cattle liver H3K27Ac
    • cattle liver H3K4Me1
    • cattle testis H3K4Me3
    • cattle testis H3K27Me3
    • cattle longissimus dorsi H3K4Me3
    • cattle bESC H3K4Me3
    • cattle bESC H3K27Me3
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • expreBar
  • Comparative Genomics
    • Cons 100 Verts
    • Cons 20 Mammals
    • AlignVSOori1