Browse Pan-genome Database

The pan-genome, the non-redundant collection of all genomic sequences of a species, is emerging as a fundamental resource for unlocking natural diversity in eukaryotes. It can serve as an alternate to the current reference genome for in-depth analysis with improved reads mapping accuracy and uncover more structural variations.

Goat pan-genome database

Pig pan-genome database

Bovine variation database

Chicken pan-genome database

Sheep pan-genome database

Duck pan-genome database


release panPig_v1 assembly

release panGoat_v1 assembly

release bovine genome variation and selective signatures


Tian X, et al. Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data[J]. Science China. Life sciences, 2019(7).

Chen NB, et al. The Bovine Genome Variation Database (BGVD): Integrated Web-database for Bovine Sequencing Variations and Selective Signatures[J]. bioRxiv, 2019: 802223.