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Composition

Genus Species/Breed Genome name Assembly accession Sex Assembly level Scaftig N50 Scaffold N50 Total sequence length Total assembly gap length Effective length
Capra San Clemente goat ASM170441v1 GCA_001704415.1 male 29+X 26,244,591 87,277,232 2,922,796,603 39,279 2,922,757,324
Capra Yunnan black goat CHIR_2.0 GCA_000317765.2 female 29+X 73,533 9,094,169 2,809,418,462 85,194,125 2,724,224,337
Capra Capra aegagrus CapAeg_1.0 GCA_000978405.1 male 29+X+Y 19,347 91,317,560 2,828,873,048 235,145,392 2,593,727,656
Capra Capra aegagrus Caeg1 GCA_000765075.1 male scaffold 51,868 1,750,063 2,583,320,943 1,840 2,583,319,103
Capra Capra ibex CapIbex_1.0 unpublished male scaffold 76,962 15,190,720 2,959,821,225 192,625,358 2,767,195,867
Ovis Ovis aries musimon Oori1 GCA_000765115.1 female scaffold 39,721 2,217,029 2,589,834,840 1,994 2,589,832,846
Ovis Texel sheep Oar_v4.0 GCA_000298735.2 female 26+X 150,472 100,009,711 2,615,499,683 28,008,926 2,587,490,757
Ovis Ovis ammon Ovis.am_1.0 unpublished male scaffold 45,638 15,734,776 2,681,054,107 23,597,181 2,657,456,926
Ammotragus Ammotragus lervia AmLer_1.0 unpublished male scaffold 27,018 1,263,981 2,712,531,442 75,464,733 2,637,066,709
Pseudois Pseudois nayaur PsNa_1.0 unpublished male scaffold 15,067 2,076,308 3,026,340,421 400,101,755 2,626,238,666

Statistics about Caprini pan-genome

Genome name Novel length Novel number Length of location Number of location Novel N50 Gene numbers
panCaprini_v1 235,612,381 199,077 163,146,511 166,251 1,057