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Composition

Genus Species/Breed Genome name Assembly accession Sex Assembly level Contig N50 Scaffold N50 Total sequence length Total assembly gap length Effective length
Gallus Red Jungle fowl, inbred line UCD001 Gallus_gallus-5.0 GCA_000002315.3 female 33+W+Z 2,894,815 6,379,610 1,230,258,557 11,764,999 1,218,493,558
Gallus Tibetan chicken TibChicken_v1.0 unpublished -- scaffold 2,015,447 1,073,691,497 42,880,887 1,030,810,610
Gallus Gallus sonneratii Gal.son_v1.0 unpublished -- scaffold 10,028,837 1,038,981,315 19,509,384 1,019,471,931
Gallus Gallus varius Gal.var_v1.0 unpublished -- scaffold 11,687,386 1,060,424,661 32,671,482 1,027,753,179
Gallus Gallus lafayetii Gal.laf_v1.0 unpublished -- scaffold 5,135,789 1,065,131,003 24,923,022 1,040,207,981

Statistics about chicken pan-genome

Genome name Novel length Novel number Novel N50 Location length Location number Gene number
panChicken_v1 53,276,636 12,192 6,880 10,740,599 3,508