Schema for gene - gene Name
  Database: hg38    Primary Table: gene Data last updated: 2018-04-10
Big Bed File: /gbdb/hg38/gene/output.bb
Item Count: 159,322
Format description: bigGenePred gene models
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart166055917Start position in chromosome
chromEnd166166755End position in chromosome
nameNM_001320302.1Name or ID of item, ideally both human-readable and unique
score0Score (0-1000)
strand-+ or - for strand
thickStart166060608Start of where display should be thick (start codon)
thickEnd166166248End of where display should be thick (stop codon)
reserved0RGB value (use R,G,B string in input file)
blockCount2Number of blocks
blockSizes4746,770,Comma separated list of block sizes
chromStarts0,110068,Start positions relative to chromStart
name2FAM78BAlternative/human readable name
cdsStartStatnoneenum('none','unk','incmpl','cmpl')
cdsEndStatnoneenum('none','unk','incmpl','cmpl')
exonFrames2,0,Exon frame {0,1,2}, or -1 if no frame for exon
typeTranscript type
geneNameNM_001320302.1Primary identifier for gene
geneName2FAM78BAlternative/human-readable gene name
geneTypeGene type

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreservedblockCountblockSizeschromStartsname2cdsStartStatcdsEndStatexonFramestypegeneNamegeneName2geneType
chr1166055917166166755NM_001320302.10-166060608166166248024746,770,0,110068,FAM78Bnonenone2,0,NM_001320302.1FAM78B
chr1166055917166166755NR_135199.10-166166755166166755034746,932,770,0,13914,110068,FAM78Bnonenone-1,-1,-1,NR_135199.1FAM78B
chr1166057425166166306XM_017000418.10-166070240166166248033238,929,321,0,12409,108560,FAM78Bnonenone-1,2,0,XM_017000418.1FAM78B
chr1166057430166166755XM_017000417.10-166070240166166248033233,5138,770,0,8195,108555,FAM78Bnonenone-1,2,0,XM_017000417.1FAM78B
chr1166060610166091339XR_001737762.10+166091339166091339031946,144,4253,0,21994,26476,LOC105371586nonenone-1,-1,-1,XR_001737762.1LOC105371586
chr1166069298166166755NM_001017961.40-166070240166166248021465,770,0,96687,FAM78Bnonenone2,0,NM_001017961.4FAM78B
chr1166154742166154798NR_030626.10-1661547981661547980156,0,MIR921nonenone-1,NR_030626.1MIR921
chr1166475039166490223XR_922240.20-166490223166490223031165,89,363,0,1841,14821,LOC105371590nonenone-1,-1,-1,XR_922240.2LOC105371590
chr1166603915166625238NR_002925.20+1666252381666252380769,98,144,189,163,143,558,0,844,8544,16883,17954,19728,20765,FMO9Pnonenone-1,-1,-1,-1,-1,-1,-1,NR_002925.2FMO9P
chr1166839403166856344NM_001314014.10+16684108416685040904201,134,1486,3760,0,1551,9534,13181,POGKnonenone-1,0,1,-1,NM_001314014.1POGK