Schema for Cancer Gene Expr EXAMPLE - Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) EXAMPLE
  Database: hg38    Primary Table: gtex Data last updated: 2017-09-09
Big Bed File: /gbdb/hg38/barChart/new/new2/tcgaGeneExpr.bb
Item Count: 39,771
Format description: BED6+5 barChart format, with name, name2 identifying gene name and accession
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart166042243Start position in chromosome
chromEnd166042350End position in chromosome
nameENSG00000207341Accession
score0Score from 0-1000, typically derived from total of median value from all tissues
strand++ or - for strand. Use . if not applicable
name2RNA5SP64HUGO gene name
expCount32Number of tissues
expScores0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0Comma separated list of median expression values per tissue
_dataOffset2042491432Offset of sample data in data matrix file, for boxplot on details page
_dataLen44974Length of sample data row in data matrix file

Sample Rows
 
chromchromStartchromEndnamescorestrandname2expCountexpScores_dataOffset_dataLen
chr1166042243166042350ENSG000002073410+RNA5SP64320.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0204249143244974
chr1166070019166166969ENSG00000188859555-FAM78B320.46,0.68,2.03,0.86,0.36,0.58,3.98,0.73,0.91,0.57,0.74,0.44,0.46,0.87,1.01,0.46,1.59,1.45,0.52,0.50,5.97,0.94,1.26,0.51,0.54,0.6 ...1755128740107859
chr1166081182166087483ENSG00000203307444+RP11-375H19.2320.24,0.39,0.60,0.52,0.48,0.33,0.34,0.29,0.55,0.44,0.52,0.52,0.49,0.30,0.50,0.18,0.54,0.32,0.42,0.31,0.77,0.42,0.50,0.44,0.46,0.5 ...194451607797442
chr1166147781166165095ENSG00000230898444-RP11-9L18.3320.33,0.56,0.41,0.49,0.43,0.30,0.39,0.41,0.54,0.45,0.22,0.62,0.64,0.36,0.42,0.55,0.54,0.36,0.38,0.29,0.44,0.78,0.56,0.47,0.39,0.4 ...241968221396965
chr1166154742166154798ENSG000002159520-MIR921320.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0214953013645573
chr1166334883166335762ENSG00000229588222+RP11-479J7.2320.0,0.09,0.17,0.11,0.0,0.0,1.26,0.0,0.06,0.0,0.0,0.08,0.06,0.08,0.16,0.06,0.69,0.08,0.0,0.0,0.41,0.04,0.08,0.0,0.0,0.06,0.0,0.13 ...238632477476024
chr1166387726166452632ENSG00000225325222-RP11-479J7.1320.04,0.06,0.07,0.11,0.06,0.04,0.09,0.05,0.09,0.08,0.0,0.10,0.07,0.05,0.07,0.08,0.09,0.08,0.06,0.03,0.03,0.15,0.04,0.05,0.06,0.06 ...227526676094883
chr1166475771166490039ENSG00000234142111-RP11-276E17.2320.0,0.10,0.0,0.0,0.05,0.04,0.0,0.0,0.04,0.0,0.04,0.02,0.03,0.17,0.03,0.05,0.02,0.0,0.0,0.03,0.03,0.04,0.02,0.10,0.0,0.0,0.0,0.0, ...250493918376898
chr1166839456166856344ENSG00000143157888+POGK323.92,18.17,23.39,22.00,15.46,9.69,18.50,8.73,12.81,11.19,6.12,16.84,16.80,9.14,13.83,13.61,13.59,9.83,8.68,10.31,17.73,12.84,10. ...915542805105515
chr1166856509166876327ENSG00000152382777-TADA1324.66,7.25,13.08,11.04,9.24,6.65,14.40,4.81,7.03,6.09,9.11,7.88,8.54,6.44,5.74,7.05,6.06,7.90,6.90,6.65,7.82,6.73,12.54,9.73,6.15 ...1044904470102644