Schema for SNPs(968) - SNPs for 968 wheat accessions
  Database: wheat    Primary Table: SNPs Data last updated: 2020-01-10
Big Bed File: /gbdb/wheat/snp/SNP.bb
Item Count: 7,353,314
Format description: SNPs for wheat
fieldexampledescription
chrom1AReference sequence chromosome or scaffold
chromStart396070285Start position in chromosome
chromEnd396070286End position in chromosome
name1A:396070286SNP postion
alleleC/TAllele
MAF0.006Minor allele frequencies
sampleNumber614Effective sample size
consequenceTypeintergenic_variantConsequenceType
geneSymbolTraesCS1A01G225500-TraesCS1A01G225600Gene Symbol

Sample Rows
 
chromchromStartchromEndnamealleleMAFsampleNumberconsequenceTypegeneSymbol
1A3960702853960702861A:396070286C/T0.006614intergenic_variantTraesCS1A01G225500-TraesCS1A01G225600
1A3960702913960702921A:396070292T/C0.000783intergenic_variantTraesCS1A01G225500-TraesCS1A01G225600
1A3960976723960976731A:396097673A/G0.19087upstream_gene_variantTraesCS1A01G225600
1A3960976973960976981A:396097698G/A0.02888upstream_gene_variantTraesCS1A01G225600
1A3960977153960977161A:396097716G/T0.40186upstream_gene_variantTraesCS1A01G225600
1A3960977623960977631A:396097763G/A0.08588upstream_gene_variantTraesCS1A01G225600
1A3960978403960978411A:396097841A/G0.02387upstream_gene_variantTraesCS1A01G225600
1A3960980323960980331A:396098033G/C0.04088upstream_gene_variantTraesCS1A01G225600
1A3960982113960982121A:396098212C/T0.02987upstream_gene_variantTraesCS1A01G225600
1A3960982193960982201A:396098220T/C0.02387upstream_gene_variantTraesCS1A01G225600