Configure Image
 
image width:pixels
label area width:characters
text size:
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)

Configure Tracks on UCSC Genome Browser: ARS_UCD_addY Apr. 2018 (Cattle/ARS-UCD1.2_Btau5.0.1Y) (ARS_UCD_addY)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Location
GC percent GC Percent in 5-Base Windows
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
Cattle NCBI Genes NCBI Gene Predictions for cattle(ARS-UCD1.2_Btau5.0.1Y)
miRBase & miRTarBase miRNA information provided by miRBase and miRTarBase
QTL QTL marker from Animal QTL Database
GWAS GWAS data collected from GWAS Atlas
-   Expression and Regulation    
cattle H3K4Me3(40) H3K4me3 ChIP-seq of cattle multiple tissues or cells
cattle H3K27Ac(21) H3K27ac ChIP-seq of cattle multiple tissues or cells
cattle H3K4Me1(20) H3K4me1 ChIP-seq of cattle multiple tissues or cells
cattle H3K27Me3(29) H3K27me3 ChIP-seq of cattle multiple tissues or cells
cattle PolII(4) PolII ChIP-seq of cattle multiple tissues or cells
cattle CTCF(16) CTCF ChIP-seq of cattle multiple tissues or cells
cattle ATAC-seq(66) ATAC-seq of cattle multiple tissues or cells
human H3K4Me3(192) H3K4Me3 CHIP-seq of human multiple tissues or cells
human H3K27Ac(141) H3K27Ac CHIP-seq of human multiple tissues or cells
human H3K4Me1(196) H3K4Me1 CHIP-seq of human multiple tissues or cells
human H3K27Me3(197) H3K27Me3 CHIP-seq of human multiple tissues or cells
human ATAC-seq(107) ATAC-seq of human multiple tissues
Chromatin State15 (dense track) Chromatin state calculated by ChromHMM
Chromatin State15 (expanded track) Chromatin state calculated by ChromHMM
expreBar expreBar
-   Comparative Genomics    
Vertebrates_phastCons... Vertebrates_phastCons
     Vert. Cons (phastCons)     Vertebrate Conservation by phastCons, converted from human data on the UCSC Genome Browser website.
     Vert. El (phastCons)     Vertebrate Conserved Elements, converted from human data on the UCSC Genome Browser website.
Mammals_phastCons... Mammals_phastCons
     Mammal Cons (phastCons)     Mammalian Conservation by phastCons, converted from human data on the UCSC Genome Browser website.
     Mammal El (phastCons)     Mammalian Conserved Elements, converted from human data on the UCSC Genome Browser website.
Vertebrates_phyloP Vertebrate Basewise Conservation by PhyloP, converted from human data on the UCSC Genome Browser website.
Mammals_phyloP Mammal Basewise Conservation by PhyloP, converted from human data on the UCSC Genome Browser website.
110-way Multiz Align Multiz alignments of 78 ruminants and 32 outgroup species