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Configure Tracks on UCSC Genome Browser: ARS1 Aug. 2016 (Goat/ARS1)
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-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Location
GC percent GC Percent in 5-Base Windows
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
Goat NCBI Genes NCBI Gene Predictions for goat(ARS1)
Goat Ensembl Genes Ensembl Gene Predictions for goat(ARS1)
Sheep NCBI Genes NCBI Gene Predictions for cross-species sheep (Oar_v4.0)
Cattle NCBI Genes NCBI Gene Predictions for cross-species cattle (UMD3.1.1)
Cattle Ensembl Genes Ensembl Gene Predictions for cross-species cattle (UMD3.1)
hg38 UCSC Genes UCSC Gene Predictions for cross-species human (hg38)
miRBase miRNA information provided by miRBase
-   Expression and Regulation    
cattle liver H3K4Me3 H3K4me3 CHIP-seq of bovine liver tissue
cattle liver H3K4Me1 H3K4Me1 CHIP-seq of bovine liver tissue
sheep adipose H3K4Me3 H3K4Me3 CHIP-seq of sheep perirenal adipose tissue
cattle testis H3K4Me3 H3K4Me3 CHIP-seq of bovine testis cell
cattle bESC H3K4Me3 H3K4me3 CHIP-seq of bovine embryonic stem cells
goat rumen H3K27Ac H3K27Ac CHIP-seq of goat rumen tissue
cattle liver H3K27Ac H3K27Ac CHIP-seq of bovine liver tissue
sheep liver ATACseq ATAC-seq of sheep liver tissue
sheep adipose H3K27Ac H3K27Ac CHIP-seq of sheep perirenal adipose tissue
cattle testis H3K27Me3 H3K27Me3 CHIP-seq of bovine testis cell
cattle bESC H3K27Me3 H3K27Me3 CHIP-seq of bovine embryonic stem cells
sheep rumen ATACseq ATAC-seq of sheep rumen tissue
cattle longissimus dorsi H3K4Me3 H3K4Me3 CHIP-seq of cattle longissimus dorsi tissue
human H3K4Me3 H3K4Me3 CHIP-seq of human multiple tissues or cells
human H3K27Ac H3K27Ac CHIP-seq of human multiple tissues or cells
human H3K4Me1 H3K4Me1 CHIP-seq of human multiple tissues or cells
human H3K27Me3 H3K27Me3 CHIP-seq of human multiple tissues or cells
regulatory regions regulatory regions were from GigaScience paper(DOI:10.1093/gigascience/gix136)
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-   Comparative Genomics    
Cons 100 Verts
Cons 20 Mammals
Ruminantia_phyloP 51 Ruminatia Basewise Conservation by PhyloP
Pecora phyloP 48 Pecora Basewise Conservation by PhyloP
Bovidae_phyloP 37 Bovidae Basewise Conservation by PhyloP
Ruminantia_phastCons 51 Ruminantia Basewise Conservation by phastCons
Pecora_phastCons 48 Pecora Basewise Conservation by phastCons
Bovidae_phastCons 37 Bovidae Basewise Conservation by phastCons
67-way Multiz Align Multiz alignments of 55 ruminants and 12 outgroup species